2012 Rustbelt RNA Meeting







Poster abstracts

Click on a title to see the abstract, on a header to sort by the respective column, or here for all abstracts.

Number Presenter Title PI
1Andrea McCue
Transposable Element Small RNAs as Regulators of Gene Expression Keith Slotkin
2Chris Petell
The DEAD-box protein Dbp2 alters localization and expression in response to glucose depletion Elizabeth Tran
3Wai Kit Ma
Dbp2 Functions as a RNA Chaperone Whose Enzymatic Activity Is Regulated by Yra1 Elizabeth Tran
4Elihu Ihms
Identification of regulatory complexes from polydisperse solutions Mark Foster
5Alok Sharma
The role of alternative splicing of NF1 exon 23a in cardiomyocyte differentiation and function. Hua Lou
6Siwen Wang
Long non-coding RNAs in Saccharomyces cerevisiae regulate expression of the GAL gene cluster through formation of RNA:DNA hybrids Elizabeth Tran
7Alice Duchon
Retroviral RNA and Protein Interactions with Host Cell Aminoacyl-tRNA Synthetases Karin Musier-Forsyth
8Baskar Bakthavachalu
Identification of SH2 domain-containing proteins that interact with tyrosine-phosphorlated PMR1 Daniel Schoenberg
9Deepak Patil
Identifying the 5’ ends of recapping targets by deep sequencing Daniel Schoenberg
10Brandon Crowe
The interactions between Archaeal RNase P components RPP30, Pop5, and the RPR Mark Foster
11Tiffiny Rye-McCurdy
In Vitro Nucleic Acid Chaperone Activity of Rous Sarcoma Virus Gag Protein is Independent of PI(4,5)P2 Binding Karin Musier-Forsyth
12Paul Sample
A Common Modification in an Unusual Place: Avoiding Conundrums in Mitochondrial Translation Juan Alfonzo
13Zdenek Paris
The Trypanosoma brucei TRM5 methyltransferase plays an essential role in mitochondrial protein synthesis and function Juan Alfonzo
14Brianne Sanford
Mapping the interaction between bacterial YbaK and tRNAPro, a novel trans editing complex Karin Musier-Forsyth
15Jason Gallentine
Regulation of alternative splicing in oncogenesis by p53 Peter Stoilov
16Danielle Dremann
Peptide binding studies with helix 69 of the bacterial ribosome Christine Chow
17Munira Fouz
Backbone branched nucleic acids: Orthogonal duplex stability and synergy as a nanotag scaffold Subha R. Das
18Katharine Stahon
Kinetic Analysis of T7 RNA Polymerase from Novel DNA Templates David Mascotti
19Karen Kormuth
Title not published online Mark Macbeth
20Rebecca Williams-Wagner
Title not published online Tina Henkin
21Qi Liu
Contribution of intersubunit bridges to the energy barrier of ribosomal translocation Kurt Fredrick
22Ioana Boeras
RNA helicase incorporated into HIV-1 virions plays a role in viral propagation Kathy BorisLawrie
23Racheal Desmone
AUG triplets in the untranslated leader region of Escherichia coli aroL support expression in the absence of a Shine-Dalgarno sequence Gary Janssen
24Siwei Li
Automating the Analysis of LC-MS data from Isotopically Labeled RNA Pat Limbach
25Heather Beck
Identification of canonical leadered mRNAs of Escherichia coli that contain 5’-terminal AUGs and function also as leaderless mRNAs. Gary Janssen
26Liuyin Ma
The role of polyadenylation in seed germination: Defining the trans(crypto)me Arthur Hunt
27Sarah Choudury
Title not published online Jane Jackman
28Chelsea Hull
Investigation of innate immune function by oxidation of age-related RNAs Philip Bevilacqua
29Daniel Comiskey
SC35 and SF2/ASF Regulate Stress-Responsive Alternative Splicing of MDM2 Dawn Chandler
30Bhalchandra Rao
Title not published online Jane Jackman
31Andrew Wallace
Development of a fluorescence-based high-throughput RNase P assay Venkat Gopalan
32Romel Dator
Mass spectrometry-based quantitation of proteins in ribonucleoprotein complexes Pat Limbach
33Sarah Geisler
Decapping of long non-coding RNAs regulates inducible genes Jeff Coller
34Le Zhang
Monitoring RNA folding and degradation in living cells using the fluorogenic malachite green aptamer Peixuan Guo
35Bibo Li
A trans-spliced telomerase RNA dictates telomere synthesis in Trypanosoma brucei Bibo Li
35Ranjodh Sandhu
A trans-spliced telomerase RNA dictates telomere synthesis in Trypanosoma brucei Dr Bibo Li
36Ian Fleming
The editing deaminase is required for anticodon loop methylation of tRNAThr in Trypanosoma brucei Juan Alfonzo
37Huizhong Xu
Sequence-dependent folding pathways of single P5ab RNAs Maumita Mandal
38Jo Marie Bacusmo
Fidelity of proline codon translation in Rhodopseudomonas palustris is maintained via a novel triple sieve mechanism of editing Karin Musier-Forsyth
39Jenna Smith
Characterization of the mRNP unique to nonsense-mediated mRNA decay substrates Kristian Baker
40Kate Ehrensberger
Zinc-dependent regulation of the adh1 antisense transcript in fission yeast Amanda Bird
41Nicholas Frecker
Regulation of the putative ykkCD riboswitch by tetracycline and related antibiotics in Bacillus subtilis Timea Gerczei
42Michele Tolbert
Biophysical characterization of hnRNPA1 interactions with the Enterovirus 71 IRES Blanton Tolbert
43Francis Fordjour
Characterization of the N-terminal Domain of Ebolavirus Nucleoprotein Sharon Crary
44Daniel L. Kiss
Cytoplasmic mRNA Recapping and Expanding the Proteome Daniel Schoenberg
45Yongli Li
Investigate aminoacyl-tRNAs and the biosynthesis of cyclodipeptides in Nocardiopsis alba Shawn Chen
46Roshan Mascarenhas
Transcriptome pharmacogenomics: Tool to improve personalized medicine Wolfgang Sadee
47Sourav Kumar Dey
Solid phase synthesis of lariat RNAs for RNA interference Subha R. Das
48Debasish Grahacharya
Solid-phase synthesis of backbone branched RNA sequences: access to branch modifications Subha R. Das
49Erik Olson
Sample Preparation and SAXS analyses of RNAs derived from the 5´UTR of the HIV-1 genome Karin Musier-Forsyth
50William Swinehart
Inefficient substrate recognition of a multi-functional tRNA modification enzyme. Jane Jackman
51Frank Tedeschi
Title not published online Eckhard Jankowsky
52Catey Dominguez
Modulating Severity of SMA Mouse Models Through SMN Splicing Manipulation Dawn Chandler
53Michael Wolfe
In vivo characterization of multimer-disrupting variants of human Thg1 Jane Jackman
54Wunan Shi
High-throughput De Novo sequencing of transfer RNAs using liquid chromatography – tandem mass spectrometry (LC-MS/MS) Pat Limbach
55Jagjit Singh
Swappable RNA Structures in the Minor Spliceosome Girish Shukla
56Elizabeth DeLaney
RNA recognition by the pattern recognition receptor RIG-I involves oligomerization and ATPase activation by blunt duplex ends Eckhard Jankowsky
57Anna Domanska
Role of ubiquitin ligase, Rsp5, in tRNA biogenesis in yeast Anita Hopper
58Yizhou Xie
Interesting Properties of Pus10, a Pseudouridine Synthase of Eukaryotes and Archaea Eugene Mueller
59Krishna Patel
Kinetic investigation of nucleotide addition by a 3'-5' polymerase Jane Jackman
60Le Luo
Characterization of exonic splicing silencer 3 in the HIV splice site A7 using segmental isotope labeling Blanton Tolbert
61Carrie Rollins
A thermodynamic study of the HIV acceptor splice site A7’s third stem loop, ESS3 Blanton Tolbert
62Sheng Liu
Progress towards structural study of the N-terminal domain of human lysyl aminoacyl tRNA synthetase Professor Pearl Tsang
63Daniel Binzel
Thermodynamic analysis of the ultra-stable phi29 pRNA three way junction Peixuan Guo
64Daya Kharel
Mimicking deleterious mutations in helix 69 rRNA to understand the consequences on stability and structure Christine Chow
65Sean McClory
Error-prone mutations in 16S rRNA provide insight into the decoding mechanism Kurt Fredrick
66Elizabeth Ransey
Title not published online Mark Macbeth
67Kirk Gaston
Title not published online Pat Limbach
68Stella Lai
Mapping the binding sites of ribosomal protein L7Ae on the Pyrococcus furiosus RNase P RNA Mark Foster
69Fuad Mohammad
ATP dependent control of tRNA repair Dawn Chandler
70Vladimir Presnyak
Title not published online Jeff Coller
71Balasubrahmanyam Addepalli
Comparison of Transfer RNA Nucleosides from Deinococcus radiodurans and D. saxicola Pat Limbach
72Lindsey Fong
Chemical circularization of siRNAs Subha R. Das
73Robert Ross
Thermus thermophilus tRNAs-Asn, Asp, His and Tyr are not modified at the wobble position Pat Limbach
74Chandani Warnasooriya
Spliceosomal Prp24 unwinds a minimal U2/U6 complex from yeast David Rueda
75Bishnu Paudel
Molecular crowding accelerates ribozyme docking and catalysis David Rueda
76Imali Subasinghe
The spliceosomal protein Prp8 stabilizes a compact conformation of the U2-U6 complex David Rueda
77Nathan Raynard
Title not published online Aaron Goldstrohm
78Amin Haghighat Jahromi
Single molecule study of the CUG repeat・MBNL1 interaction and its inhibition by small molecules Steven Zimmerman Maria Spies
79Xin Liu
RNA Chaperone Activity in Ribosome Biogenesis Carl Correll
80Eric Patrick
Single-Base Resolution Nucleic Acids Dynamics David Rueda
81Samantha Sanford
Minimum Functional Requirements for Plasmodium Telomerase RNA Kausik Chakrabarti
82M. Adnan Siddiqui
Title not published online Dr. Malathi Krishnamurthy
83Eric Danhart
Rapid in vivo evolution and NMR structure determination of an RNA motif critical for systemic trafficking of PSTVd Mark Foster
84Hiroto Kambara
Analysis of the relationship between gene architecture and repeat elements of BORG RNA Saba Valadkhan
85Jason Talkish
Disruption of ribosome biosynthesis results in a shift from co- to post-transcriptional pre-rRNA processing and breakdown of the traditional assembly hierarchy John Woolford