2012 Rustbelt RNA Meeting RRM posters

Poster abstracts

Click on a title to see the abstract, on a header to sort by the respective column, or here for all abstracts.

Number	Presenter	Title	PI
77	Nathan Raynard	Title not published online	Aaron Goldstrohm
40	Kate Ehrensberger	Zinc-dependent regulation of the adh1 antisense transcript in fission yeast	Amanda Bird
57	Anna Domanska	Role of ubiquitin ligase, Rsp5, in tRNA biogenesis in yeast	Anita Hopper
26	Liuyin Ma	The role of polyadenylation in seed germination: Defining the trans(crypto)me	Arthur Hunt
35	Bibo Li	A trans-spliced telomerase RNA dictates telomere synthesis in Trypanosoma brucei	Bibo Li
42	Michele Tolbert	Biophysical characterization of hnRNPA1 interactions with the Enterovirus 71 IRES	Blanton Tolbert
60	Le Luo	Characterization of exonic splicing silencer 3 in the HIV splice site A7 using segmental isotope labeling	Blanton Tolbert
61	Carrie Rollins	A thermodynamic study of the HIV acceptor splice site A7’s third stem loop, ESS3	Blanton Tolbert
79	Xin Liu	RNA Chaperone Activity in Ribosome Biogenesis	Carl Correll
16	Danielle Dremann	Peptide binding studies with helix 69 of the bacterial ribosome	Christine Chow
64	Daya Kharel	Mimicking deleterious mutations in helix 69 rRNA to understand the consequences on stability and structure	Christine Chow
8	Baskar Bakthavachalu	Identification of SH2 domain-containing proteins that interact with tyrosine-phosphorlated PMR1	Daniel Schoenberg
9	Deepak Patil	Identifying the 5’ ends of recapping targets by deep sequencing	Daniel Schoenberg
44	Daniel L. Kiss	Cytoplasmic mRNA Recapping and Expanding the Proteome	Daniel Schoenberg
18	Katharine Stahon	Kinetic Analysis of T7 RNA Polymerase from Novel DNA Templates	David Mascotti
74	Chandani Warnasooriya	Spliceosomal Prp24 unwinds a minimal U2/U6 complex from yeast	David Rueda
75	Bishnu Paudel	Molecular crowding accelerates ribozyme docking and catalysis	David Rueda
76	Imali Subasinghe	The spliceosomal protein Prp8 stabilizes a compact conformation of the U2-U6 complex	David Rueda
80	Eric Patrick	Single-Base Resolution Nucleic Acids Dynamics	David Rueda
29	Daniel Comiskey	SC35 and SF2/ASF Regulate Stress-Responsive Alternative Splicing of MDM2	Dawn Chandler
52	Catey Dominguez	Modulating Severity of SMA Mouse Models Through SMN Splicing Manipulation	Dawn Chandler
69	Fuad Mohammad	ATP dependent control of tRNA repair	Dawn Chandler
35	Ranjodh Sandhu	A trans-spliced telomerase RNA dictates telomere synthesis in Trypanosoma brucei	Dr Bibo Li
82	M. Adnan Siddiqui	Title not published online	Dr. Malathi Krishnamurthy
51	Frank Tedeschi	Title not published online	Eckhard Jankowsky
56	Elizabeth DeLaney	RNA recognition by the pattern recognition receptor RIG-I involves oligomerization and ATPase activation by blunt duplex ends	Eckhard Jankowsky
2	Chris Petell	The DEAD-box protein Dbp2 alters localization and expression in response to glucose depletion	Elizabeth Tran
3	Wai Kit Ma	Dbp2 Functions as a RNA Chaperone Whose Enzymatic Activity Is Regulated by Yra1	Elizabeth Tran
6	Siwen Wang	Long non-coding RNAs in Saccharomyces cerevisiae regulate expression of the GAL gene cluster through formation of RNA:DNA hybrids	Elizabeth Tran
58	Yizhou Xie	Interesting Properties of Pus10, a Pseudouridine Synthase of Eukaryotes and Archaea	Eugene Mueller
23	Racheal Desmone	AUG triplets in the untranslated leader region of Escherichia coli aroL support expression in the absence of a Shine-Dalgarno sequence	Gary Janssen
25	Heather Beck	Identification of canonical leadered mRNAs of Escherichia coli that contain 5’-terminal AUGs and function also as leaderless mRNAs.	Gary Janssen
55	Jagjit Singh	Swappable RNA Structures in the Minor Spliceosome	Girish Shukla
5	Alok Sharma	The role of alternative splicing of NF1 exon 23a in cardiomyocyte differentiation and function.	Hua Lou
27	Sarah Choudury	Title not published online	Jane Jackman
30	Bhalchandra Rao	Title not published online	Jane Jackman
50	William Swinehart	Inefficient substrate recognition of a multi-functional tRNA modification enzyme.	Jane Jackman
53	Michael Wolfe	In vivo characterization of multimer-disrupting variants of human Thg1	Jane Jackman
59	Krishna Patel	Kinetic investigation of nucleotide addition by a 3'-5' polymerase	Jane Jackman
33	Sarah Geisler	Decapping of long non-coding RNAs regulates inducible genes	Jeff Coller
70	Vladimir Presnyak	Title not published online	Jeff Coller
85	Jason Talkish	Disruption of ribosome biosynthesis results in a shift from co- to post-transcriptional pre-rRNA processing and breakdown of the traditional assembly hierarchy	John Woolford
12	Paul Sample	A Common Modification in an Unusual Place: Avoiding Conundrums in Mitochondrial Translation	Juan Alfonzo
13	Zdenek Paris	The Trypanosoma brucei TRM5 methyltransferase plays an essential role in mitochondrial protein synthesis and function	Juan Alfonzo
36	Ian Fleming	The editing deaminase is required for anticodon loop methylation of tRNAThr in Trypanosoma brucei	Juan Alfonzo
7	Alice Duchon	Retroviral RNA and Protein Interactions with Host Cell Aminoacyl-tRNA Synthetases	Karin Musier-Forsyth
11	Tiffiny Rye-McCurdy	In Vitro Nucleic Acid Chaperone Activity of Rous Sarcoma Virus Gag Protein is Independent of PI(4,5)P2 Binding	Karin Musier-Forsyth
14	Brianne Sanford	Mapping the interaction between bacterial YbaK and tRNAPro, a novel trans editing complex	Karin Musier-Forsyth
38	Jo Marie Bacusmo	Fidelity of proline codon translation in Rhodopseudomonas palustris is maintained via a novel triple sieve mechanism of editing	Karin Musier-Forsyth
49	Erik Olson	Sample Preparation and SAXS analyses of RNAs derived from the 5´UTR of the HIV-1 genome	Karin Musier-Forsyth
22	Ioana Boeras	RNA helicase incorporated into HIV-1 virions plays a role in viral propagation	Kathy BorisLawrie
81	Samantha Sanford	Minimum Functional Requirements for Plasmodium Telomerase RNA	Kausik Chakrabarti
1	Andrea McCue	Transposable Element Small RNAs as Regulators of Gene Expression	Keith Slotkin
39	Jenna Smith	Characterization of the mRNP unique to nonsense-mediated mRNA decay substrates	Kristian Baker
21	Qi Liu	Contribution of intersubunit bridges to the energy barrier of ribosomal translocation	Kurt Fredrick
65	Sean McClory	Error-prone mutations in 16S rRNA provide insight into the decoding mechanism	Kurt Fredrick
4	Elihu Ihms	Identification of regulatory complexes from polydisperse solutions	Mark Foster
10	Brandon Crowe	The interactions between Archaeal RNase P components RPP30, Pop5, and the RPR	Mark Foster
68	Stella Lai	Mapping the binding sites of ribosomal protein L7Ae on the Pyrococcus furiosus RNase P RNA	Mark Foster
83	Eric Danhart	Rapid in vivo evolution and NMR structure determination of an RNA motif critical for systemic trafficking of PSTVd	Mark Foster
19	Karen Kormuth	Title not published online	Mark Macbeth
66	Elizabeth Ransey	Title not published online	Mark Macbeth
37	Huizhong Xu	Sequence-dependent folding pathways of single P5ab RNAs	Maumita Mandal
24	Siwei Li	Automating the Analysis of LC-MS data from Isotopically Labeled RNA	Pat Limbach
32	Romel Dator	Mass spectrometry-based quantitation of proteins in ribonucleoprotein complexes	Pat Limbach
54	Wunan Shi	High-throughput De Novo sequencing of transfer RNAs using liquid chromatography – tandem mass spectrometry (LC-MS/MS)	Pat Limbach
67	Kirk Gaston	Title not published online	Pat Limbach
71	Balasubrahmanyam Addepalli	Comparison of Transfer RNA Nucleosides from Deinococcus radiodurans and D. saxicola	Pat Limbach
73	Robert Ross	Thermus thermophilus tRNAs-Asn, Asp, His and Tyr are not modified at the wobble position	Pat Limbach
34	Le Zhang	Monitoring RNA folding and degradation in living cells using the fluorogenic malachite green aptamer	Peixuan Guo
63	Daniel Binzel	Thermodynamic analysis of the ultra-stable phi29 pRNA three way junction	Peixuan Guo
15	Jason Gallentine	Regulation of alternative splicing in oncogenesis by p53	Peter Stoilov
28	Chelsea Hull	Investigation of innate immune function by oxidation of age-related RNAs	Philip Bevilacqua
62	Sheng Liu	Progress towards structural study of the N-terminal domain of human lysyl aminoacyl tRNA synthetase	Professor Pearl Tsang
84	Hiroto Kambara	Analysis of the relationship between gene architecture and repeat elements of BORG RNA	Saba Valadkhan
43	Francis Fordjour	Characterization of the N-terminal Domain of Ebolavirus Nucleoprotein	Sharon Crary
45	Yongli Li	Investigate aminoacyl-tRNAs and the biosynthesis of cyclodipeptides in Nocardiopsis alba	Shawn Chen
78	Amin Haghighat Jahromi	Single molecule study of the CUG repeat･MBNL1 interaction and its inhibition by small molecules	Steven Zimmerman Maria Spies
17	Munira Fouz	Backbone branched nucleic acids: Orthogonal duplex stability and synergy as a nanotag scaffold	Subha R. Das
47	Sourav Kumar Dey	Solid phase synthesis of lariat RNAs for RNA interference	Subha R. Das
48	Debasish Grahacharya	Solid-phase synthesis of backbone branched RNA sequences: access to branch modifications	Subha R. Das
72	Lindsey Fong	Chemical circularization of siRNAs	Subha R. Das
41	Nicholas Frecker	Regulation of the putative ykkCD riboswitch by tetracycline and related antibiotics in Bacillus subtilis	Timea Gerczei
20	Rebecca Williams-Wagner	Title not published online	Tina Henkin
31	Andrew Wallace	Development of a fluorescence-based high-throughput RNase P assay	Venkat Gopalan
46	Roshan Mascarenhas	Transcriptome pharmacogenomics: Tool to improve personalized medicine	Wolfgang Sadee