| 1 | Chenyu Lin
|
PufA regulates R-loop formation, DNA damage repair and chemotherapy resistance |
Wayne Miles |
| 2 | Emily Fairchild
|
Peptides to inhibit the T-Box Riboswitch |
Jennifer Hines |
| 3 | Robert Wang
|
Robust discovery and quantification of transcript isoforms from error-prone long-read RNA sequencing data |
Yi Xing |
| 4 | Kailey Worner
|
A congenital hydrocephalus causing mutation in Trim71 results in stem-cell and neural-differentiation defects through inhibiting Lsd1 mRNA translation |
Wenqian Hu |
| 5 | Archie Bhullar
|
The dynamic, motile and deformative properties of RNA nanoparticles facilitate the third milestone of drug development |
Peixuan Guo |
| 6 | Fiona Fitzgerald
|
The DEAD-box helicase Drs1 plays a role in compaction of 25S rRNA domain III during nucleolar stages of large subunit assembly |
John Woolford |
| 7 | Alan Mlotkowski
|
Computationally determined pKa values of modified nucleobases: more than just a series of numbers |
Christine Chow |
| 8 | Ian Hall
|
Investigating Natural Variation in SAM-I Riboswitch Structure and Function |
Sarah Keane |
| 9 | Aparna Biswas
|
Dynamic states of eIF6 and SDS variants modulate interactions with uL14 of the 60S ribosomal subunit |
Sofia Origanti |
| 10 | Kaushik Saha
|
Pre-mRNA 3D structural scaffold as a contributor to the mammalian splicing code |
Gourisankar Ghosh |
| 11 | Feng Jiang
|
Title not published online |
Peng Yao |
| 12 | Ben Jepson
|
Analysis of tRNA methyltransferase homologs from zebrafish reveals similarities and differences to human Trm10 enzymes |
Jane Jackman |
| 13 | GeunYoung Sim
|
Manganese-dependent microRNA trimming by 3′→5′ exonucleases generates 14-nucleotide or shorter tiny RNAs. |
Kotaro Nakanishi |
| 14 | Sun Jeong Im
|
Role of Modified Nucleotides in Mediating Structure and Oxidative Damage of U2 snRNA |
Christine Chow |
| 15 | Justin Davis
|
Telomerase RNA biogenesis requires direct interactions of a core group of nucleolar family proteins in the parasitic protist, Trypanosoma brucei |
Kausik Chakrabarti |
| 16 | Yi Xing
|
isoCirc catalogs full-length circular RNA isoforms in human transcriptomes |
Yi Xing |
| 17 | Ian Price
|
Title not published online |
Wen Tang |
| 18 | Joseph Smith Jr.
|
Massive upregulation of COII mRNA editing correlates with alterations in RESC protein and RNA interactions during T. brucei differentiation |
Laurie Read |
| 19 | Grace Johnecheck
|
Substrate recognition by two 3′ to 5′ RNA polymerases in Dictyostelium discoideum |
Jane Jackman |
| 20 | Satenik Valesyan
|
LC-MS/MS-based detection of 5-methyl cytidine in E. coli tRNAs arising from oxidative stress |
Pat Limbach |
| 21 | Madeline Glennon
|
Title not published online |
Jessica Brown |
| 22 | Nishanti Sudhakar
|
RNA Tert-Seq - a biochemical pipeline to discover novel functional RNAs with tertiary structure |
Phil Bevilacqua |
| 23 | Yi-Hui Wang
|
Investigating transcriptional program of C. elegans piRNA expression |
Wen Tang |
| 24 | Reuben Kern
|
Quantifying cleavage of known and novel twister ribozymes in vivo in rice |
Phil Bevilacqua |
| 25 | Anwesha Ghosh
|
Elucidating the role of RNA modifications in acetate-grown and methanol-grown Methanosarcina acetivorans |
Phil Bevilacqua |
| 26 | Haiyun Liu
|
Nucleic Acid Protective and Rescuing Properties of Early Earth Coacervates |
Phil Bevilacqua |
| 27 | Mika Schievelbein
|
Does the MALAT1 Triple Helix Form in the Presence of mascRNA? |
Jessica Brown |
| 28 | Jahree Sosa
|
Functional implications of a cancer-associated mutation on LARP1 DM15 region |
Andrea Berman |
| 29 | Caleb Embree
|
Disruption of spliceosomal proteins reduces NMD efficiency |
Guramrit Singh |
| 30 | Erwin Doe
|
Bioconjugation of functionalized oligodeoxynucleotides to hydrophobic fluorescence reporters |
Emil Khisamutdinov |
| 31 | Gowthami Mahendran
|
Title not published online |
Jessica Brown |
| 32 | Tiffany Barwell
|
Dissecting cross-talks between intron turnover pathway and nonsense mediated decay via the interactions of RNA debranching enzyme, DBR1 |
Kausik Chakrabarti |
| 33 | Hannah Hertz
|
Comparative analysis of piRNA sequences, targets and functions in nematodes |
Wen Tang |
| 34 | Kobie Kirven
|
MLSnitch: Towards a Machine Learning Method for RiboSNitch Prediction |
Phil Bevilacqua |
| 35 | Krishna Shivakumar
|
Title not published online |
Jessica Brown |
| 36 | Cassandra Catacalos
|
Polyadenylation site choice correlates with epitranscriptomic mark, N6-methyladenosine (m6A), in Plasmodium falciparum |
Kausik Chakrabarti |
| 37 | Qian He
|
The N-Terminal Domain of Eukaryotic Translation Initiation Factor 4B promotes P body Levels in Yeast |
Sarah Walker |
| 38 | Aldrex Munsayac
|
Small-angle scattering techniques as a structural tool to study RNA:RNA complexes |
Sarah Keane |
| 39 | Brandon Iwaniec
|
Determining the role of the 3’-5’ reverse polymerase in Myxococcus xanthus |
Jane Jackman |
| 40 | Nicholas Arredondo
|
Trans-spliced Leader Sequences Present a Novel Evolutionary Target of the DM15 Region of LARP1 |
|
| 41 | Yaping Liu
|
Structural basis for terminal loop recognition and stimulation of miR-20a processing by hnRNPA1 and hnRNPA2B1 |
Sarah Keane |
| 42 | Kaitlin Klotz
|
Structural and Functional Profiling of telomerase RNA domain deletion mutants in Trypanosoma brucei, a deep-branching parasitic agent of neuropathology in mammals |
Kausik Chakrabarti |
| 43 | Sicong Ma
|
Regulatory structural features of pre-miR-31 for Dicer processing |
Sarah Keane |
| 44 | Deepak Shrestha
|
Title not published online |
Christine Chow |
| 45 | Mingyi Zhu
|
DecoyFinder: Identification of Decoy Sequences in Sets of Homologous RNA Sequences |
David Mathews |
| 46 | Bayley Carter
|
Investigating PYM1 function in cellular and flaviviral gene expression |
|
| 47 | Rhiannon McCracken
|
Structural and functional analysis of Crassostrea gigas OAZ-PK RNA |
Juliane Soukup |
| 48 | Jose Reyes Franceschi
|
Development of a chemo-transcriptomic platform for identifying RNA-binding small molecules |
Amanda L. Garner |
| 49 | Ashutosh Dubey
|
KREH1 RNA helicase activity promotes utilization of initiator gRNAs across multiple mRNAs in trypanosome RNA editing |
Laurie Read |
| 50 | Anindhya Sundar Das
|
Aminoacyl-tRNA synthetase complex-interacting multifunctional protein 3 (AIMP3) is essential for physiological function of heart |
Federica Accornero |
| 51 | Emil Khisamutdinov
|
Evaluation of isosteric substitutions of non-Watson-Crick basepairs in recurrent RNA 3D motifs |
Emil Khisamutdinov |
| 52 | Andrew Weeks
|
Zinc-dependent regulation of sod1 mRNA transcript levels. |
|
| 53 | Vasilios Orologas
|
Super resolution nanoscopy of Trypanosoma brucei RNA binding protein 42 during acute infection in mice |
Vivian Bellofatto |
| 54 | Evan Spell
|
Characterization of pug1/gap2 double knockout in the human fungal pathogen C. albicans |
Doug Bernstein |
| 55 | Jarrett Wilson
|
Recognition of RNA duplexes by the tRNAHis guanylyltransferase |
Jane Jackman |
| 56 | Sarah Nock
|
Proximity labeling to investigate protein dynamics mediating nonsense-mediated mRNA decay in yeast |
Kristian Baker |
| 57 | Phillip McCown
|
Improved long non-coding RNA annotation and detection in human transcriptomic profiles |
Matthias Kretzler |
| 58 | Taylor Ayers
|
Differential m5C in embryonic mRNA reveals methyltransferase specificity |
|
| 59 | Samuel Seibert
|
Investigating the formation and function of 2’-O-methylation in the anticodon loop of tRNAPhe |
Michael Guy |
| 60 | Chase Morse
|
Spectra of ribonucleosides in hyperglycemic mammalian cells and diabetic murine cardiac models |
|
| 61 | Kenzie Scarpitti
|
A non-canonical RNA-binding domain of the fragile X protein, FMRP, elicits translational repression independent of mRNA G-quadruplexes |
Michael Kearse |
| 62 | Daisy DiVita
|
New insights into the alternative translation initiation factor eIF2A |
Michael Kearse |
| 63 | Minli Ruan
|
Determining the Influence of PUS7 localization on RNA Substrate Selection |
Kristin Koutmou |
| 64 | Sara Ali
|
Mutate2test: New Algorithm and Software for Mutational Design |
David Mathews |
| 65 | Justin Mabin
|
Knockout of three U5 snRNA sequence variants in 293T cells alters splicing and expression of an overlapping set of genes |
David Brow and Peter Lewis |
| 66 | Rachel Giles
|
Inosine mRNA modifications impact translation elongation |
Kristin Koutmou |
| 67 | Gabrielle Caito
|
Title not published online |
|
| 68 | Tulsi Bhandari
|
Analysis of photo-oxidation induced products of post-transcriptional modifications in tRNA using LC-MS/MS technique |
Pat Limbach |
| 69 | Sajad Shiekh
|
FRET-PAINT for Studying Long Telomeric DNA Overhangs and Their Interactions with Shelterin Proteins |
Hamza Balci |
| 70 | Abdul McKinney
|
Title not published online |
Hua Lou |
| 71 | Akila Venkataramany
|
Modulating insulin receptor alternative splicing for therapeutic benefit in Ewing sarcoma |
|
| 72 | Madison Allegretti
|
Investigating molecular interactions with 3’-5’ RNA polymerases in Dictyostelium Discoideum |
|
| 73 | Benjamin Warner
|
A crucial role for the leader-trailer helix and minor role for the antitermination complex in biogenesis of the 30S ribosomal subunit |
Kurt Fredrick |
| 74 | Caleb Gooden
|
Characterization of alternative polyadenylation in roots of red clover |
Arthur Hunt |
| 75 | Asif Rayhan
|
Title not published online |
Pat Limbach |
| 76 | Sepideh Fakhretaha Aval
|
Role of the sarcin-ricin loop (SRL) of 23S rRNA in assembly of the 50S ribosomal subunit |
Kurt Fredrick |
| 77 | Amelia Cochran
|
Biochemical and structural analysis of Pus4 mRNA target selection |
|
| 78 | Yu-Ci Syu
|
Role of HTLV-1 Gag-host factor interactions in chaperoning tRNA-Pro primer annealing |
|
| 79 | Kurtis Breger
|
Title not published online |
Jessica Brown |
| 80 | Joe Kanlong
|
Title not published online |
|
| 81 | Alezandra Hernandez
|
Plant-exclusive domain of trans-editing enzyme ProXp-ala confers dimerization and enhanced tRNA binding |
Karin Musier-Forsyth |
| 82 | Ingrid Kilde
|
Exploring structural determinants of ligand selectivity in cobalamin riboswitches |
|
| 83 | Shardul Kulkarni
|
Characterizing the function of the human CCR4-NOT complex using rapid degron systems. |
Joseph Reese |
| 84 | Emily Erdmann
|
Investigating the Role of ADARs and A-to-I RNA editing in Germline RNA Regulation |
Heather Hundley |
| 85 | Katie Clark
|
tRNA family-specific turnover pathways and environmental stresses regulate tRNA intron degradation |
|
| 86 | Sandip Chorghade
|
Post-transcriptional silencing of the nuclear poly(A) binding protein N1 is critical for postnatal maturation and function of the heart |
Auinash Kalsotra |
| 87 | Nicholas Baker
|
Temporally controlled expression of a splicing factor in single cells coordinates the metabolic and proliferative activities of regenerating livers |
|
| 88 | Ullas Valiya Chembazhi
|
Transcriptional and post-transcriptional landscapes of alcohol-associated human liver diseases |
|
| 89 | Subhashis Natua
|
Cardiomyocyte-specific knockout of nuclear poly(A)-binding protein leads to heart failure and death |
|
| 90 | Anna Vradi
|
Discriminator Base is a Critical Recognition Element for Trypanosoma Brucei Ala-tRNAPro Editing Domains |
|
| 91 | Gabriel Silveira dAlmeida
|
RRP44 contributes to the unusually short half-life of tRNATyr in T. brucei |
Juan Alfonzo |
| 92 | Bohye Jeong
|
Translational regulation of photoreceptor-specific mRNA by Musashi 1 and Musashi 2 proteins for photoreceptor maintenance |
Peter Stoilov |
| 93 | Ananya Mahapatra
|
Characterizing the Role of ADARs in Regulating Insulin Signaling and Inter-Organ Communication |
Heather Hundley |
| 94 | Alfa Dhakal
|
Role of ADARs in the pathogen response of C. elegans |
Heather Hundley |
| 95 | Lankani Gunaratne
|
Understanding the function of the La protein in Trypanosoma brucei |
|
| 96 | Rylan Watkins
|
Investigating the Role of Trypanosoma brucei Prolyl-tRNA Synthetase and MCP3 in Maintaining tRNAPro Translational Fidelity |
Karin Musier-Forsyth |
| 97 | Boyoon Yang
|
Gathering insights into the importance of ADR-1/ADR-2 interaction in RNA editing in vivo |
Heather Hundley |
| 98 | Cailyn Leo
|
Characterization of novel TRMT1 variants linked to intellectual disability disorders in the human population |
Dragony Fu |
| 99 | Priyanka Mukherjee
|
Long noncoding RNAs are abundant targets of ADAR3 in glioblastoma |
Heather Hundley |
| 100 | Arden Bui
|
AtRTD2 versus AtRTD3: how Serine/Arginine-rich 45 affects the sperm transcriptome in Arabidopsis thaliana based on 2 versions of transcriptome reference |
Xiao-Ning Zhang |
| 101 | Serena Fan
|
The Interplay within the ASAP Complex in Arabidopsis thaliana |
Xiao-Ning Zhang |
| 102 | David Goich
|
Crosstalk and compensation between the Hog1 and Gcn2 pathways in C. neoformans stress adaptation. |
John Panepinto |
| 103 | Sean Duffy
|
Upf1 is required for translational response to oxidative stress in Cryptococcus neoformans |
John Panepinto |
| 104 | Siddik Alom
|
Ribosomal protein bL38 a uniquely conserved component of the Bacteroidia ribosome |
Kurt Fredrick |
| 105 | Jillian Wagner
|
Title not published online |
|
| 106 | Amanda Bloom
|
C. neoformans casein kinase Yck2 contributes to translational reprogramming and cell wall remodeling during temperature stress |
John Panepinto |
| 107 | Zac LaRocca-Stravalle
|
The dichotomy of MDM2 splicing regulation in response to genotoxic stress |
|
| 108 | John Kipp
|
Regulation of pd-l1 expression through splice-switching oligonucleotide treatment. |
|
| 109 | Paul Russell
|
Small uORFs favor translation re-initiation but do not protect mRNAs from nonsense-mediated decay |
Michael Kearse |
| 110 | Mohamed Rushdhi Mohamed Rauff
|
Title not published online |
Sanjaya Abeysirigunawardena |
| 111 | Sudeshi Abedeera
|
Title not published online |
Sanjaya Abeysirigunawardena |
| 112 | Thulasi Mahendran
|
Selective mRNA oxidation of the mitochondrial electron transport chain complex subunits in human neuronal cells dysregulate energy production in Multiple Sclerosis |
Soumitra Basu |
| 113 | Jiale Xie
|
Title not published online |
Sanjaya Abeysirigunawardena |
| 114 | Zezhong Wan
|
mRNA modifications impact stop codon recognition |
Kristin Koutmou |
| 115 | Catherine Wilhelm
|
Structural and kinetic characterization of multiple oligomeric states in a minimal protein-only RNase P |
Markos Koutmos |
| 116 | Erik Koppes
|
Ablation of the imprinted PWS-orthologous domain in a rat insulinoma cell line reveals cell-autonomous transcriptional deficiencies in peptide hormones and ER chaperones independent of ER stress |
Nicholls Robert D. |
| 117 | Jae Lee
|
Investigating the relationship between structure and function of htrA RNA Thermometer |
|
| 118 | Corey Knowles
|
Stress-induced translational control induces the ISR in the human pathogen Cryptococcus neoformans |
John Panepinto |
| 119 | Fawwaz Naeem
|
Sequestration of the anti-Shine-Dalgarno (ASD) causes reduced efficiency of prfB programmed frameshifting in Flavobacterium johnsoniae |
|
| 120 | Vaishnavi Sidharthan
|
Identification of inhibitors of Methanobrevibacter smithii RNase P using small molecule microarrays |
Venkat Gopalan |
| 121 | Kaizheng Liu
|
Reversible Acylating Reagents to Dictate RNA’s Fate |
Anna M. Kietrys |
| 122 | Alex Runyon
|
Understanding canonical T-box riboswitches: A study of the Bacillus subtilis thrS RNA |
Tina Henkin |
| 123 | Melissa Tosiano
|
RNP granule condensation: a potential mechanism for post-transcriptional regulation of the yeast-to-hyphal transition in Candida albicans |
Joel McManus |
| 124 | Chenghong Deng
|
The influence on transcription and translation by the TRMT1 tRNA modification enzyme |
Dragony Fu |
| 125 | Katherine Tucker
|
PUMILIO competes with AUF1 to control DICER1 RNA levels and miRNA processing |
|
| 126 | Mohammed Enamul Hoque
|
Transcription regulation by CRISPR/dCas9 complex in the context of G-quadruplex structure |
Soumitra Basu |
| 127 | Vikas Kaushik
|
Deciphering the principles of RNA binding specificity of multi-domained proteins using non-canonical amino acids |
Edwin Antony |
| 128 | Safiya Khurshid
|
Deciphering the function of MDM2-ALT1 splice isoform using a novel mouse model. |
Dawn Chandler |
| 129 | Walter Zahurancik
|
Modulation of archaeal RNase P ribozyme activity by temperature- and metal-ion–dependent phase separation |
Venkat Gopalan |
| 130 | Megan Van Horn
|
A method for isolation of target circular RNAs through specific biotinylated-DNA probes |
Anna M. Kietrys |
| 131 | Ila Marathe
|
Establishing robust calibration curves for mass photometry-based measurements of RNAs and ribonucleoprotein complexes |
Vicki Wysocki |
| 132 | Gable Wadsworth
|
Entropy-driven Phase Transition of RNA |
Priya Banerjee |
| 133 | Evan Corden
|
Title not published online |
Joel McManus |
| 134 | Mohammed Hassan
|
The use of RNA nanoparticles as vectors for ocular drug delivery |
Pat Limbach |
| 135 | Jian Shi
|
Identification of Circular RNAs in Early Human Immunodeficiency Virus Infection |
Anna M. Kietrys |
| 136 | Avleen Chawla
|
The catalytic activity of H1 circRNA |
Anna M. Kietrys |
| 137 | Raahul Sriram
|
Title not published online |
|
| 138 | Mary brintha croos Anburaj
|
Stability and functional effect of RNA G-quadruplex within the open reading frame of NAT8L mRNA under oxidative stress |
Soumitra Basu |
| 139 | Bereketab Abeje
|
Title not published online |
|
| 140 | Anees Mohammed Keedakkatt Puthenpeedikak
|
Refinement of the Amber Force Field For RNA: Improving the Description of Non-Bonded Interactions |
David Mathews |
| 141 | Evan Rogers
|
Role of Dhx36/G4R1 in coronary angiogenesis and heart development |
Philip Smaldino |
| 142 | Sushant Bangru
|
Title not published online |
Auinash Kalsotra |
| 143 | Samantha Gargasz
|
Regulation of the Oncogenic Androgen Receptor Variant 7 by micro and long noncoding RNAs in Prostate Cancer |
Girish Shukla |
| 144 | Surbhi Sona
|
Single-Cell and Spatial Mapping Identify Cell Types and Signaling Networks in the Human Ureter with Regards to its Regenerative Potential |
|
| 145 | Ying Xu
|
Title not published online |
Fu-Sen Liang |
| 146 | Elizabeth Liz Tidwell
|
High throughput screening of small molecule binding partners for the FMN riboswitch by a multidisciplinary approach |
Markos Koutmos |
| 147 | Haoyun Yang
|
Dynamics of RNA Conformational Sampling by the SMK box riboswitch |
Mark Foster |
| 148 | Christina Haddad
|
Title not published online |
Blanton Tolbert |
| 149 | Scott Abernathy
|
Investigating the effectiveness of HILIC-type column chemistries for oligonucleotides |
Pat Limbach |
| 150 | Jeff Levengood
|
Utilization of high-pressure NMR for the study of allosteric regulation of hnRNP A1 |
Blanton Tolbert |
| 151 | Melanie Clawson
|
Semi-enzymatic Synthesis of Pseudouridine |
|
| 152 | Nicole Burbach
|
Purification with |
|
| 153 | Anthony Degregorio
|
Synthesis of 1-Aminopyridine for Fluorescent Studies of RNA |
|
| 154 | Anita Dhara
|
The role of pumilio homolog 1 (PUM1) in human hemoglobin switching and erythroid differentiation |
Nithya Merlin Gnanapragasam |
| 155 | Christina Rabeler
|
Ectopic expression of HSATII RNA results in nuclear focal accumulations and chromatin defects |
|
| 156 | Bappaditya Roy
|
Ribosomes lacking bS21 gain function to regulate protein synthesis |
Kurt Fredrick |
| 157 | Sk Abdus Sayeed
|
Investigating TERRA functions in VSG switching and telomere maintenance in Trypanosoma brucei |
Bibo Li |
| 158 | Christina Akirtava
|
Unraveling the roles of 5’ transcript leaders in gene regulation |
|
| 159 | Aubree Zimmer
|
The basis of multi-step tRNA recognition by a eukaryotic tRNA editing deaminase |
Juan Alfonzo |
| 160 | Sineth G Kodikara
|
Single-Molecule Study of Telomeric Overhangs Using FRET Method |
Hamza Balci |
