Poster abstracts

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Number Presenter Title PI
1Alexandra KuzmishinNagy
Title not published online
1Erin Prestwich
Title not published online Erin Prestwich
2Noa Perry
Moonlighting of mtDNA-encoded non-coding RNA JumpStart shapes response to stress in lung progenitor cells Anna Blumental-Perry
3Shaokun Li
TBC1D16 alternative polyadenylation emerges as a candidate disease effector in pontocerebellar hypoplasia type 10 caused by CLP1 R140H mutation Ashleigh Schaffer
4Viktoriya Kalinina
Modulation of Target of EGR1 (TOE1) function by interacting and trans-acting factors Cassandra Hayne
5Saurja DasGupta
Drawing the RNA World: A Historical Inquiry into the Origins of Life through Comics DasGupta Saurja
6Emily Slobodenyuk
Three genes, one protein: Investigating 3'UTR-driven mRNA localization and protein function of the calmodulin gene family Chase Weidmann
7Julie Bove
Decoding RNA cis-regulatory elements in transcription Jonathan Henninger
8Mackenzie Dillenbeck
CityRNAs selectively silence mutant alleles with single-nucleotide variants Kotaro Nakanishi
9Aftab Mollah
Where Two Signals Converge: Cooperative Recognition of Sequence and m6A modification of RNA by hnRNP A1 Sanjaya Abeysirigunawardena
10Jae Bucknor
Nuclear lncRNA NMRAL2P distinguishes NRF2 activation in lung cells and supports NSCLC cell proliferation Chase Weidmann
11Chamali Thalagaha Mudiyanselage
m6A RNA modifications modulate the stability of FUS-dependent biological condensates Sanjaya Abeysirigunawardena
12Chathurani Ekanayake
RNA-binding peptide influences epitranscriptomic regulation by preferably binding to unmodified RNAs targeted by NSUN2. Sanjaya Abeysirigunawardena
13Ashwini Shivakumar
Epitranscriptomic profiling of male and female hemp (Cannabis sativa) uncovers sex-biased RNA modification programs Arthur Hunt
14Shachi Vyas
Translation control of T cell expansion and autoimmune responses by a non-conventional RNA binding protein Sarah Gaffen
15Kira Holton
Substrate selection and functional outcomes by the mRNA-modifying enzyme PUS7 Chase Weidmann
16Lydia Phillips
Targeting intronic RNA sequences with modified antisense oligonucleotides to boost gene expression Jonathan Henninger
17John Larson
MaP-ing the RNA Interactome Chase Weidmann
18Isabelle Juhler
Investigating the mechanism of PKR regulation by PACT in triple-negative breast cancer Kyle Cottrell
19Lichun Zhou
Single-nucleus transcriptomics reveals cell type specific Roles of CPSF30 in Arabidopsis Root Development Arthur Hunt
20Cassandra Smoak
Identification of small molecule sensitizers to ADAR1 or PACT depletion in triple-negative breast cancer Kyle Cottrell
21Anish Jupudy
Title not published online Yi Zhang
22Janhavi Sahasrabudhe
The Myddosome and CBM signalosome interact with RNA Nandan Gokhale
23Allison Chan
Insights into the regulation of CLP1 by the TSEN complex Cassandra Hayne
24Jacob Diehl
Title not published online Brittany Morgan
25Grace Johnecheck
Title not published online Sarah Keane
26Alexa Schnell
Leveraging non-invasive transcriptomics for longitudinal profiling of living cells Joseph Luna
27Rohan Krishna
eIF4B and eIF4H Define Complementary Translational Programs via Context-Dependent mRNA Selection Joseph Luna
28Caroline Zu
Defining the structural basis of RNA substrate recognition by human Pus enzymes Markos Koutmos
29Kayla Lenshoek
MALAT1 promotes cancer cell plasticity through reversible control of EMT Chase Weidmann
30Stefanie Hedayati
The IDR of the rRNA methyltransferase Nop2 is critical for ribosome biogenesis John Woolford
31Justin Brennan
Double-stranded RNA spatial dysregulation and innate immune activation by a SARS-CoV-2 defective viral genome Nandan Gokhale
32Tamara Jimenez
Exploring the effective length for circular RNA to form a g-quadruplex structure Sumirtha Balaratnam
33Brandon Michalides
A role for ZNF622 in MAVS signaling Nandan Gokhale
34Diego Vallejos
The Role of the FY C-Terminal Domain in Flowering Regulation in Arabidopsis thaliana Arthur Hunt
35Bailey Weatherbee
Multifunctional RNA-binding Transcription Factors Coordinate Cell States in Development Aaron Zorn
36Anna Childers
SRPK1 interacts with the HTLV-1 hbz RNA and influences cellular proliferation Amanda Panfil
37Christopher Bonar
Title not published online Clark Patricia
38Rachel Dziekan
Functional characterization of N-terminally truncated isoforms reveals a therapeutic strategy for cystic fibrosis Michelle Hastings
39Sophia Mitton-Fry
Disentangling ligand-induced shifts in probing chemistry from RNA structural rearrangements Julius Lucks
40Samarth Kumar
The function of specific MAVS-associated RNAs in antiviral signaling Nandan Gokhale
41Opeyemi Fatunbi
NUCLEOBASE Protonation in RNA Riboregulators Jennifer Hines
42Vidusha Kothwela
Non-Canonical RNA-Binding Proteins Revealed by Flaviviral Infection Joseph Luna
43Mary English
Development of imaging tools to map the pH and redox environment of ribonucleoprotein biomolecular condensates Seth Childers
44Summer Davis
Characterizing Candida auris pseudouridine-5’-monophosphate-glycosidase mutants Doug Bernstein
45Samantha Gargasz
Characterization of ARLNC1 as a Competing Endogenous RNA in Prostate Cancer Girish Shukla
46Noah Helton
Temporal Gating Dictates Stress-induced Transcript Export From the Nucleus Stephanie Moon
47Ella Yi
RevProtFinder: detecting reverse protonation in RNA from hydrogen bond geometry Phil Bevilacqua
48Johann Roque
Selective Covalent Ligand Targeting of Differential Dynamics in RNA-Binding Protein Brittany Morgan
49Luca Argentieri
miRNA-mediated Post Transcriptional Regulation of Androgen Receptor Splice Variant 7 in Prostate Cancer Girish Shukla
50Chance Creviston
G4R1/DHX36 knockdown does not impact stress granule assembly in HeLa or C9orf72 ALS neural progenitor cells Philip Smaldino
51Hieu Nguyen
Comparative analysis of piRNA pathways and transposons in nematodes Wen Tang
52Rachel Robertson
A mass spectrometry-based diagnostic method for detection of clinically relevant RNA biomarkers Venkat Gopalan
53Toby Bomser
Kinetic studies to elucidate the activation of an archaeal RNase P RNA by L7Ae, a ribosomal protein Venkat Gopalan
54Jae-Hee Bae
Exons are spliced in coordination with their neighbors as a consequence of splicing order and exon junction complex dependence Karla Neugebauer
55Chuyue Zhang
Identification of novel RNA-protein binding events through a covalent tag Karla Neugebauer
56Gabriella Proctor
Investigating Angiogenin-Mediated RNA cleavage and translational regulation through nanopore sequencing Agnes Karasik
57Dawt Sang
Creating Chimeric tRNAs to Study Substrate Recognition by a Trans-Editing Enzyme Lexie Kuzmishin Nagy
58Vy Nguyen
Characterizing and Comparing D-Amino Acid Toxicity Phenotypes in E. coli Strains Lexie Kuzmishin Nagy
59Zixi Yun
Title not published online Mohammad Nazim
60Hannah Hertz
Title not published online Wen Tang
61Victoria Rose
Systematic CLN3 Batten disease mutation characterization for splice-switching oligonucleotide design Michelle Hastings
62Hannah Stebbins
Title not published online Rachel Mitton-Fry
63Kumar Vaibhav
Investigating magnesium-dependent changes in an archaeal RNase P RNA using single-molecule label-free, nanopore sensing and atomic force microscopy Venkat Gopalan
64Daniel Morgan
Characterizing Cas13d Trans-cleavage And Its Consequences In Mammalian Cells Agnes Karasik
65Chin Wang
Title not published online Wen Tang
66Lucia Johnson
Transcriptional and Translational responses to stress in Cryptococcus neoformans Joel McManus
67Gemma May
IRES-TraPPr reveals novel insighest into viral and cellular IRES activity Joel McManus
68Danushika Herath
Effects of Sequence and Environment on T-Box Riboswitch Function Jennifer Hines
69Kelsey Slattery
A potential role for G4R1/DHX36, a G4 helicase, in genomic maintenance in C9orf72 ALS/FTD Philip Smaldino
70Yu-Hsun Huang
Investigating potential roles of tRNA-Arg-TCT-2-1 in the regulation of Hes7 and embryonic laterality Susan Cole
71Steven Smeal
Disease-causing mutations disrupt the co-patterning of transcriptional and RNA processing condensates Jonathan Henninger
72Stella Kahn
Probing the role of aconitase in coupling metabolic flux to RNA decay within bacterial ribonucleoprotein bodies in Caulobacter crescentus Seth Childers
73Jing-Wen Yao
Plp isoform diversity and functional roles in neuroblasts Junnan Fang
74Yichen He
Short RNA duplex formation kinetics in artificial cytoplasms Phil Bevilacqua
75Ivy Mordick
Cell-cycle-dependent mRNA Localization at Centrosomes Junnan Fang
76Ian Barrie
Understanding the molecular basis of bifunctional catalysis and specificity of tRNA methyltransferase Trm10 in Thermococcus Kodakarensis Jane Jackman
77Rinku Dhungana
Dynamic upregulation of CHD3 and CHD5 following CHD4 depletion in mouse embryonic stem cells Sarah Hainer
78Danni Li
The post-transcriptional regulation of centrosomal Plp mRNA Junnan Fang
79Ernest Njuguna
Quantitative Analysis of algC RNA Regulation in Escherichia coli Neil White
80Gwenyth Gallagher
Polyamine-assisted assembly of DNA nanostructures Arun Richard Chandrasekaran
81Maryam Muzaffar
Functional Characterization of Cell Wall-Associated miRNAs in Arabidopsis Using Reverse Genomics heldohio.edu
82Korey Kihm
Title not published online Jane Jackman
83Heer Kukreja
Title not published online Arun Richard Chandrasekaran
84Braden Burdick
Using TurboID to Identify FY-Associated Proteins in Arabidopsis thaliana Arthur Hunt
85Tina Jiayu Fu
Upstream RNA structure tunes intrinsic termination Julius Lucks
86Ben Owens
Mass spectrometric evidence for lack of 3' heterogeneity in RNAs transcribed by the T7 RNA polymerase mutant G47A + 884G Venkat Gopalan
87Yuntong Zou
Million-Scale Functional Profiling Enables Machine Learning for RNA Function Prediction and Design in ZTP Riboswitches Julius Lucks
88Thomas Versosky
Exploring chromatin dynamics and gene activation by the fusion oncogene PAX3::FOXO1 using CRISPR-Sirius2 Li-Chun Tu
89Helen Washington
Title not published online Michelle Hastings
90Zachary Bickell
Proximity labeling to identify binding partners of meiotic mRNA interceptor protein in Schizosaccharomyces pombe Tommy Vo
91Dana Beseiso
Investigating Functional Changes in Transcription Start Site Usage in Breast Cancer Rachel Niederer
92Rodolfo Murguia
Title not published online Brito Querido Jay
93Ericka J. Gonzales Rodriguez
Gene regulation driven by cooperative communication between tryptophan and RNA Mark Foster
94Ava Barnes
Translational Regulation of NRXN1 Joel McManus
95Chloe Reavill
Identifying the Trm10-related mechanism of tRNA Trp degradation associated with 5-fluorouracil toxicity in S. cerevisiae Jane Jackman
96Xia Zhou
Bidirectional Antisense Control of Insulin Receptor Splicing Reveals Oncogenic and Metabolic Phenotypes in HCC Models
97Debojyoti Das
Loss-of-function of RNA-binding protein PRRC2B causes translational defects and cardiovascular malformation Peng Yao
98Chloe Nagasawa
Shedding light on aberrant splicing in rhabdomyosarcoma: A novel dual-fluorescence MDM2 reporter approach Dawn Chandler
99Nada Elbarbary
Characterizing dysregulation of two catalytic ribonucleoprotein complexes in acute myeloid leukemia Venkat Gopalan
100Olivia Roumaya
Zebrafish genetic models for Trm10 function reveal new substrate-dependent impacts of m1R9 modification in vertebrates Jane Jackman
101Mara Reynolds
Title not published online Michael Kearse
102Myles Thornton-Sherman
TwisterML: Assessing the distribution and genomic context of twister ribozymes across the tree of life Phil Bevilacqua
103Bianca Lederfeind
Investigating the evolution and prevalence of Homologs of Aquifex aeolicus RNase P (HARP) in the phylum Aquificota Venkat Gopalan
104Ian Yatchik
Title not published online Laura Ritchey
105Xave -- Xavier Bower
A novel doxycycline aptazyme controls gene expression in human cells at sub-antimicrobial dose equivalents Julius Lucks
106Andrew Reynolds
Rational Design of Switchable Aptamer Sensors through Structural and Thermodynamic Tuning Xiaohong Tan
107Sonia Ling
A pipeline for Bisulfite Pseudouridine Detection (B-PsiD) Chase Weidmann
108Sydney Townsend
Poly(A) Tail Remodeling during the innate immune response Agnes Karasik
109Ioulia Rouzina
Kinetic selectivity of viral genome packaging by HIV-1 Karin Musier-Forsyth
110Michael Yu
Control of Ribosomal Protein Gene Expression during Metabolic Reprogramming by Protein Arginine Methylation Michael Yu
111Jasmine Harper
Mechanistic Coupling of cDNA Synthesis and Transesterification Drives Group II Intron Retromobility Aaron Robart
112Hari Timilsina
Fluorescent DNA Aptamer Sensor for Liraglutide via Capture SELEX Xiaohong Tan
113Md Sharear Saon
Identifying and characterizing shifted G•U wobbles arising from alternative protonation of RNA Phil Bevilacqua
114Trinity Dubree
Evaluation of Binding of DNA Aptamers to PSMA by Surface Plasmon Resonance Emil Khisamutdinov
115Jala Fahmy
Loss of the tRNAᵀʸʳ intron leads to ribosome stalling and integrated stress response activation Ambro van Hoof
116Victoria Haber
Title not published online Joel McManus
117Allysan Nunes
The role of pseudouridine modification on mRNA stability during innate immunity Agnes Karasik
118Jacob Horn
Identifying novel Viral 5’ UTR elements that regulate translation. Rachel Niederer
119Dijana Beganovic
Fluorogenic strand-displacement probes for live-cell imaging of timeless RNA processing and trafficking Nils Walter
120Grace Eramo
Translational control by alternative splicing in the 5' untranslated region Rachel Niederer
121Cole Masuga
Title not published online Monica Pillon
122Alex Colarusso
TAMALE: Setting sites on nucleotide and RNA-binding proteins Monica Pillon
123Brandon Iwaniec
Surveying tRNA introns across eukaryotes and archaea: The intron of Tyr-GUA tRNA is conserved from the last common ancestor of all eukaryotes, but some species lack all tRNA introns Ambro van Hoof
124Huaiying Zhang
γPNA-based RNA imaging reveals a role of APBs in localizing TERRA to telomeres in ALT cancer cells Huaiying Zhang
125Ben Pockrass
Systematic interrogation of the CFTR 5' UTR reveals translational control elements Rachel Niederer
126Danyang Liu
Thermodynamic characterization of RNA secondary structures motifs containing inosine Brent M. Znosko
127Jarrett Wilson
Mapping Sm Protein Binding Sites on snRNA using RNP-MaP Chase Weidmann
128Paul Kremer
Unraveling the molecular details of risdiplam binding Yaqiang Wang
129Sophia Dorsey
Exploring the role of alternative polyadenylation on elavl1a expression and function during zebrafish erythropoiesis Blatnik Monica
130Sandra Baltazar
Exploring the role of alternative polyadenylation on elavl1a expression and function during zebrafish erythropoiesis Blatnik Monica
131Alexey Shinkevich
Title not published online Emil Khisamutdinov
132Leanne Kelley
Defining the mechanism and spatiotemporal impacts of a DEAD-box helicase on RNA editing Heather Hundley
133Emma Winland
Investigating the Role of ADARs and RNAi in the C. elegans Behavioral Immune Response Heather Hundley
134Sampurna Dutta
Role of ADR-1 in maintaining RNA homeostasis and promoting longevity Heather Hundley
135Emma Lamb
Identifying the role of intronic editing in the C. elegans nervous system Heather Hundley
136Kanishk Neerumalla
Yeast and HeLa models of Shwachman-Diamond Syndrome deficiency reveal TP53-independent activation of p38/Hog1 and integrated stress response signaling Seth Corey
137Michelle Johnson
Expression of DNA damage triggered modification and ALS linked mutations in fused in sarcoma (FUS) cause no change in cellular viability Michelle Johnson
138Mary Anne Johnson
The Role of Arc1p’s OB-Fold-Mediated Editing Activity In Vivo Karin Musier-Forsyth
139Meher Akhlas Nuri
Aptamer-powered surveillance of SARS-CoV-3 Tan Xiaohong
140Sk Abdul Mohid
Title not published online Yi Zhang
141Nirmani Ampe Vedaralalaya
Development of Aptamer Based Sensor for Detection of Dual Acetylated Histone Protein Xiaohong Tan
142Victoria Miguel Rodrigues
Characterization of tRNA ligase (Trl1) function in pathogenic fungi reveals redundancy in kinase and CPD domains of Trl1 in pathogenic fungi Ambro van Hoof
143Lizi Zhang
Title not published online Xiao Li
144Lucia Beste Zehnder
Elucidation of RyhB target prioritization in E. coli Janie Frandsen
145Pooja Madan Mohan
mRNA editing by tRNA-adenosine deaminases Yi Zhang
146Ethan Dixon
Mapping the conformational landscape: AUC as a tool to examine structural diversity Sarah Keane
147Tasnin Nila
ALS-Associated KIF5A Mutations Alter Pre-mRNA Secondary Structure Revealed by Nanopore DMS Mutational Profiling Karin Musier-Forsyth
148Caleb Clark
Substrate recognition and function of the yeast ribonuclease Rnt1 Ambro van Hoof
149Abigail Lu
Substrate recognition by the RTCB ligase: sequence and structural motifs in pre-tRNA introns Cassandra Hayne
150Belal Chowdhury
FAM120A couples selective mRNA recognition to translation initiation and autoregulates its own translation through a 5′-UTR uORF-m6A module Peng Yao
151Jacob Smith
De novo analysis reveals alternative splicing induced by ATF6 and the UPR Vladislav Belyy
152Sarah Starcovic
Structure Validation of a Group II Intron RNA Dimer using Small-Angle X-ray Scattering Aaron Robart
153Toby Frazer
Dissecting unexpected connections between transcriptional control and nonsense mediated mRNA decay Guramrit Singh
154Abigail Jackson
The N-1 nucleotide identity and discriminator base, along with conformational dynamics govern cleavage and binding by Arabidopsis thaliana PRORP2 Markos Koutmos
155Suada Leskaj
Visualizing translation initiation on a very short 5′ UTR Jailson Brito Querido
156Margaret Bohmer
Identification and Characterization of ATP-Binding Noncoding RNAs in Viruses and Humans Peixuan Guo
157Isaiah Kaufman
Tuning protein production: Insights from tRNA availability and codon usage bias in diverse plant species Polly Hsu
158Anuttama Pal
Title not published online Guramrit Singh
159Savanna Schutte
Dissecting UPF3-UPF2 regulation of UPF1 dynamics within the Nonsense-Mediated mRNA Decay pathway Guramrit Singh
160Yubin Kim
Multi-omic analysis of PUS7 D166E reveals alterations in RNA modification and gene expression Kristin Koutmou
161Rosella Stower
Investigating the role of transfer RNA 5-cytidine methyltransferases in regulating translation under stress Kristin Koutmou
162Swapnil Mukherjee
Dissecting the activation mechanism of the bifunctional kinase RNase IRE1 with orthogonal control over oligomerization and phosphorylation Vladislav Belyy
163Genine Collins
Inducing HSAT2 Expression in Primary Fibroblast Cells Dawn Carone
164Debadrita Paul
Dissecting flux through parallel nonsense-mediated mRNA decay (NMD) branches Guramrit Singh
165Brenden Johnson
Uncovering a novel role for the U4 snRNA in 5’ splice site selection with implications for neurodevelopmental disorder Jonathan Staley
166Xingchen Liu
TruB-mediated tRNA pseudouridylation modulates translation during stress in E.coli Kristin Koutmou
167Kai Jin
From Conserved RNA Nanostructures to Therapeutics: Discovery of 12 Novel Non-coding RNAs and RNA-Micelle-Based Co-Delivery for Cancer Therapy Dr. Peixuan Guo
168SeyedMilad SafarSajadi
Peptide-conjugated antisense oligonucleotides for enhanced intracellular delivery and splice switching Dennis Bong
169Mamta Nirmal
Deletion of Elongator Protein 1 (Elp1) relieves heterochromatin defects in a Pol II mutant of Schizosaccharomyces pombe Tommy Vo
170Shannon Pestovich
Analyzing the role of the C. elegans DEAD-box protein GLH-1 in formation of the cytoplasmic gradient and subsequent fertility Andrea Putnam
171Nicholas Colorito
Primordial RNA Assembly by Trans-Acting Ligase Ribozymes Saurja DasGupta
172Sarah El-Mohri
Title not published online Markos Koutmos
173Priyanka Priyanka
Prebiotically Plausible Coacervates Support RNA Folding and Ribozyme Catalysis Saurja DasGupta
174Aleksandr Ivanov
Deciphering function and mechanism of translation elongation factor eIF5A in heart Peng Yao
175Jen Gallagher
Mechanisms of Ribosome Turnover and Translational Reprogramming in Response to Ricin-Induced Damage Jen Gallagher
176Himanshu Dashora
Translational reprogramming in hypoxic glioma stem-like cells Jennifer Yu
177Joseph Larson
In vitro investigation into C. elegans translational repressor and core processing body component CAR-1 Andrea Putnam
178Marrett Gilfus
Covalent Cas9: using crosslinking to make active RNPs Wei Sun
179Pabina Pokharel
Genetically encoded chemical crosslinking of RNA (GECX-RNA) for covalent CRISPR/Cas13: towards RNA biosensing Wei Sun
180Junxing Chen
Detecting RNA isoform-binding preference of RNA-binding protein by GERX-MaP Wei Sun
181Raja Sundari Meenakshi Sundaram
Defining the In Vivo role of the RNA-Binding Protein Pumilio1 in Erythropoiesis Gnanapragasam Merlin Nithya
182Ariana Mulla-Feroze
Title not published online Anna M. Kietrys
183Anchal Agarwal
Transcriptome and eCLIP-seq analyses of eIF2A targets in 3T3-L1 mouse cells Anton Komar
184Samuel MacKinnon
Investigation of the DNA-membrane association between the chloroplast nucleoid and thylakoid membrane in Arabidopsis thaliana Andrzej Wierzbicki